I have a few customer shops with Autologic and when they cannot do a job they call me. It is a very good tool, but not the end-of-it-all solution, and sometimes has a very stupid and nonsense limitations. As a matter of fact there is a very little Autologic(or ISTA for that matter) can do over Winkfp,Tool32 and INPA. Anyhow, disable and enable keys is completely different from changing the status of a key from normal to CA.
It will be interesting if OP reports the end result.