Maybe the connection for the UP function at the motor is faulty? Maybe the pin isn't seating or something. Have you tested the connection for +12v when trying up/down. You should definitely get it for DOWN since that works... if you aren't getting it for UP, then something upstream (and not in the door unless it's a frayed/shorting wire) is causing the problem.

You said it was a new motor right?

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2005 X5 4.4i Build 04/05 Maintenance/Build Log
Nav, Pano, Sport (Purchased 06/14 w/ 109,000 miles) (Sold 8/15 w/121,000 miles)

2006 X5 4.8is Build 11/05 Maintenance/Build Log
Nav, DSP, Pano, Running Boards, OEM Tow Hitch, Cold Weather Pckg (Purchased 08/15 w/ 90,500 miles)

2010 X5 35d Build 02/10
Nav, HiFi, 6 DVD, Sports Pckg, Cold Weather Pckg, HUD, CAS, Running Boards, Leather Dash, PDC, Pano (Purchased 03/17 w/ 136,120 miles)