If the bottom one is the most recent I wouldn't bother with anything else.

Vibration wise, I'm dealing with this as well and I've narrowed it down to the CV shafts.
I've changed the brake rotors, all control arms, struts etc as you have.
I'm planning on chasing the shafts this next week I hope. Going OE as aftermarket isn't good on these trucks.

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04 E53 4.8
98 E38 4.4
04 Touareg 4.2 (x2)
87 E30 (getting a 4.4/6spd swap)
89 E30, selling it
96 E36 parts car
MK2 jetta with a 1.9alh swap
90 XJ Crawler
2000 XJ crawler in the works
63 Ragtop bug
64 Bug
06 F-350 to drag all the above when they brake.